Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 95 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1096: thiamine biosynthesis protein ThiC
is similar to:
PaperBLAST

D4GV87: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Haloferax volcanii

63% id,
89% cov

THIC_BACSU / P45740: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Bacillus subtilis
thiC / P45740: phosphomethylpyrimidine synthase monomer (EC 4.1.99.17) from Bacillus subtilis

62% id,
76% cov

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

59% id,
73% cov

More...

Synpcc7942_1432: bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
is similar to:
PaperBLAST

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

52% id,
99% cov

A0A0H2UN41: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Streptococcus pneumoniae

50% id,
99% cov

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; DHBPS; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

50% id,
97% cov

More...

Synpcc7942_1171: hypothetical protein
is similar to:
PaperBLAST

PHRB_AGRFC / A9CH39: (6-4) photolyase; (6-4)DNA photolyase; DNA photolyase PhrB; Photoreactivating enzyme PhrB; EC 4.1.99.13 from Agrobacterium fabrum
A9CH39: (6-4)DNA photolyase (EC 4.1.99.13) from Agrobacterium tumefaciens

44% id,
100% cov

Q3IXP1: (6-4)DNA photolyase (EC 4.1.99.13) from Cereibacter sphaeroides

41% id,
97% cov

Synpcc7942_0112: Deoxyribodipyrimidine photo-lyase type I
is similar to:
PaperBLAST

M1V623: (6-4)DNA photolyase (EC 4.1.99.13) from Cyanidioschyzon merolae

31% id,
92% cov

Q9I910: (6-4)DNA photolyase (EC 4.1.99.13) from Xenopus laevis

30% id,
92% cov

A0A2Z5J5J9: (6-4)DNA photolyase (EC 4.1.99.13) from Chlamydomonas sp.

30% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory