Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 128 curated entries in PaperBLAST's database that match '4.2.1.10'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2104: cyanate hydratase
is similar to:
PaperBLAST

Q59948: cyanase (EC 4.2.1.104) from Synechococcus elongatus
Q5N0J1: cyanase (EC 4.2.1.104) from Synechococcus sp.

100% id,
100% cov

A5GPQ6: cyanase (EC 4.2.1.104) from Synechococcus sp.

75% id,
100% cov

Q55367: cyanase (EC 4.2.1.104) from Synechocystis sp.

77% id,
96% cov

More...

Synpcc7942_0915: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

G8M0G7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acetivibrio clariflavus

57% id,
97% cov

O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa

55% id,
99% cov

D4LCT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Ruminococcus champanellensis

54% id,
100% cov

More...

Synpcc7942_B2643: ThiJ family protein
is similar to:
PaperBLAST

INHA_PSEPU / Q8G9F9: Isonitrile hydratase; Cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / GI|25901009: cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / Q8G9F9: isocyanide hydratase subunit (EC 4.2.1.103) from Pseudomonas putida
Q8G9F9: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas putida

49% id,
99% cov

Q4K977: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas fluorescens

53% id,
89% cov

Synpcc7942_0839: Nitrilase
is similar to:
PaperBLAST

E1CJF8: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Arthrobacter pascens

34% id,
94% cov

Synpcc7942_1993: methylthioribulose-1-phosphate dehydratase
is similar to:
PaperBLAST

MTNB_BACSU / O31668: Methylthioribulose-1-phosphate dehydratase; MTRu-1-P dehydratase; EC 4.2.1.109 from Bacillus subtilis
mtnB / O31668: methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) from Bacillus subtilis

32% id,
97% cov

Synpcc7942_0597: naphthoate synthase
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

29% id,
99% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

28% id,
99% cov

Synpcc7942_2467: shikimate 5-dehydrogenase
is similar to:
PaperBLAST

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

29% id,
52% cov

Q6PUG0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

28% id,
54% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

30% id,
46% cov

More...

Synpcc7942_0684: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

DHB4_MOUSE / P51660: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Mus musculus

42% id,
29% cov

DHB4_RAT / P97852: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Rattus norvegicus
Hsd17b4 / P97852: peroxisomal multifunctional enzyme type 2 subunit (EC 4.2.1.107) from Rattus norvegicus

42% id,
29% cov

DHB4_HUMAN / P51659: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; Short chain dehydrogenase/reductase family 8C member 1; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Homo sapiens

40% id,
29% cov

Synpcc7942_0525: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

39% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
21% cov

Synpcc7942_0232: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

27% id,
28% cov

Synpcc7942_0608: hypothetical protein
is similar to:
PaperBLAST

I7MAL0: methylthioribulose 1-phosphate dehydratase (EC 4.2.1.109) from Tetrahymena thermophila

26% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory