Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 53 curated entries in PaperBLAST's database that match '4.2.1.12'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2143: tryptophan synthase subunit beta
is similar to:
PaperBLAST

TSB1 / P14671: tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana

78% id,
85% cov

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

61% id,
97% cov

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

59% id,
98% cov

More...

Synpcc7942_2577: N-acetylmuramic acid-6-phosphate etherase
is similar to:
PaperBLAST

P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae

44% id,
99% cov

MURQ_ECOLI / P76535: N-acetylmuramic acid 6-phosphate etherase; MurNAc-6-P etherase; N-acetylmuramic acid 6-phosphate hydrolase; N-acetylmuramic acid 6-phosphate lyase; EC 4.2.1.126 from Escherichia coli
YfeU / b2428: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Escherichia coli
murQ / P76535: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Escherichia coli

42% id,
97% cov

G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia

42% id,
94% cov

Synpcc7942_0626: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

31% id,
88% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

30% id,
83% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

31% id,
52% cov

Synpcc7942_0411: tryptophan synthase subunit alpha
is similar to:
PaperBLAST

A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis

39% id,
39% cov

Synpcc7942_2612: threonine synthase
is similar to:
PaperBLAST

trpB2 / Q9WZ09: tryptophan synthase β2 subunit (EC 4.2.1.122) from Thermotoga maritima

25% id,
47% cov

Synpcc7942_1466: cysteine synthase
is similar to:
PaperBLAST

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

41% id,
16% cov

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

30% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory