Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 117 curated entries in PaperBLAST's database that match '4.2.3.4'.

These curated entries have 80 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0525: 3-dehydroquinate synthase
is similar to:
PaperBLAST

Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis

66% id,
100% cov

AROB_ECOLI / P07639: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Escherichia coli
AroB / b3389: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
aroB / P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli

45% id,
98% cov

AROB_HELPY / P56081: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori

43% id,
93% cov

More...

Synpcc7942_1367: cytochrome P450
is similar to:
PaperBLAST

EIZFM_STRCO / Q9K498: Bifunctional albaflavenone monooxygenase/terpene synthase; Cytochrome P450 170A1; CYP170A1; EC 1.14.15.39; EC 4.2.3.47 from Streptomyces coelicolor

27% id,
90% cov

Synpcc7942_0232: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

27% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory