Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 14 curated entries in PaperBLAST's database that match '4.2.3.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0525: 3-dehydroquinate synthase
is similar to:
PaperBLAST

Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis

66% id,
100% cov

AROB_ECOLI / P07639: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Escherichia coli
AroB / b3389: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
aroB / P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli

45% id,
98% cov

AROB_HELPY / P56081: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori

43% id,
93% cov

More...

Synpcc7942_0232: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

27% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory