Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 103 curated entries in PaperBLAST's database that match '5.1.3.2'.

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_0604: ribulose-phosphate 3-epimerase
is similar to:		 PaperBLAST

I3DTP3: ribulose-phosphate 3-epimerase (EC 5.1.3.1); L-ribulose-5-phosphate 3-epimerase (EC 5.1.3.22) from Bacillus methanolicus

 61% id,
100% cov

Synpcc7942_0320: UDP-galactose 4-epimerase
is similar to:		 PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

 47% id,
97% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

 45% id,
97% cov

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

 44% id,
98% cov

More...

Synpcc7942_0552: UDP-N-acetylglucosamine 2-epimerase
is similar to:		 PaperBLAST

WBPI_PSEAE / G3XD61: UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase; UDP-alpha-D-GlcNAc3NAcA 2-epimerase; UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronic acid 2-epimerase; EC 5.1.3.23 from Pseudomonas aeruginosa
wbpI / G3XD61: UDP-2,3-diacetamido-2,3-dideoxyglucuronic acid 2-epimerase (EC 5.1.3.23) from Pseudomonas aeruginosa

 35% id,
99% cov

Synpcc7942_2100: dTDP-glucose 4,6-dehydratase
is similar to:		 PaperBLAST

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 33% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 32% id,
99% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 32% id,
98% cov

More...

Synpcc7942_1149: dTDP-glucose 46-dehydratase
is similar to:		 PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 32% id,
100% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 31% id,
99% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 30% id,
99% cov

More...

Synpcc7942_0058: dTDP-4-dehydrorhamnose 3,5-epimerase
is similar to:		 PaperBLAST

CHMJ_STRBI / Q5SFD1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces bikiniensis

 38% id,
80% cov

GERF_STRSQ / Q331R1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces sp.
gerF / Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase monomer (EC 5.1.3.27) from Streptomyces sp.
Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase (EC 5.1.3.27) from Streptomyces sp.

 38% id,
80% cov

Synpcc7942_2098: dTDP-4-dehydrorhamnose 3,5-epimerase
is similar to:		 PaperBLAST

GERF_STRSQ / Q331R1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces sp.
gerF / Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase monomer (EC 5.1.3.27) from Streptomyces sp.
Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase (EC 5.1.3.27) from Streptomyces sp.

 36% id,
84% cov

CHMJ_STRBI / Q5SFD1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces bikiniensis

 35% id,
84% cov

Synpcc7942_1700: GDP-fucose synthetase NAD dependent epimerase/dehydratase
is similar to:		 PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 29% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 28% id,
98% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 26% id,
98% cov

More...

Synpcc7942_1342: GDP-mannose 4,6-dehydratase
is similar to:		 PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 28% id,
94% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 26% id,
97% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

 22% id,
95% cov

More...

Synpcc7942_0061: CDP-glucose 4,6-dehydratase
is similar to:		 PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 26% id,
98% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 25% id,
97% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 26% id,
71% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory