Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 89 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_1261: triosephosphate isomerase
is similar to:

tpiA / O32757: triosephosphate isomerase subunit (EC from Lactobacillus delbrueckii

51% id,
99% cov

TPIS_GEOSE / P00943: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Geobacillus stearothermophilus
P00943: triose-phosphate isomerase (EC from Geobacillus stearothermophilus

51% id,
98% cov

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Clostridium perfringens

48% id,
100% cov


Synpcc7942_1116: phosphoglycerate kinase
is similar to:

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC; EC from Thermotoga maritima
pgk / P36204: Pgk (EC; EC from Thermotoga maritima
P36204: triose-phosphate isomerase (EC from Thermotoga maritima

57% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory