Curated BLAST for Genomes


Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 8 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2548: isopropylmalate isomerase small subunit
is similar to:

LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC from Salmonella typhimurium

37% id,
95% cov

LEUD_CORGL / Q8NQV7: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC from Corynebacterium glutamicum

32% id,
92% cov

leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans

40% id,
71% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory