Curated BLAST for Genomes

 

Curated BLAST

Searching in Synechococcus elongatus PCC 7942 (SynE)

Found 4 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuD' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Synechococcus elongatus PCC 7942, or try another query

Synpcc7942_2548: isopropylmalate isomerase small subunit
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

37% id,
98% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

35% id,
81% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

32% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory