Curated BLAST
Searching in Pseudomonas simiae WCS417 (WCS417)
Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).
These curated entries have 7 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query
PS417_17360: NAD-dependent dehydratase
is similar to: | PaperBLAST |
PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae | 100% id,
100% cov |
Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens | 87% id,
100% cov |
URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae | 83% id,
100% cov |
URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida | 76% id,
100% cov |
HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae | 68% id,
93% cov |
URODH_AGRFC / Q7CRQ0: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum
udh / Q7CRQ0: D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum
Q7CRQ0: uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens | 51% id,
97% cov |
D6Y7Y8: uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora | 46% id,
96% cov |
More... |
PS417_22005: epimerase
is similar to: | PaperBLAST |
URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida | 38% id,
88% cov |
Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens | 37% id,
84% cov |
URODH_AGRFC / Q7CRQ0: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum
udh / Q7CRQ0: D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum
Q7CRQ0: uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens | 35% id,
86% cov |
PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae | 36% id,
83% cov |
URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae | 36% id,
83% cov |
HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae | 33% id,
81% cov |
More... |
PS417_02315: NAD-dependent dehydratase
is similar to: | PaperBLAST |
HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae | 34% id,
59% cov |
URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida | 31% id,
63% cov |
PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae | 30% id,
62% cov |
Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens | 29% id,
63% cov |
URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae | 30% id,
62% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory