Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 35 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_22885: homoserine dehydrogenase
is similar to:

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC from Neisseria gonorrhoeae

58% id,
100% cov

Ga0059261_2711: homoserine dehydrogenase (EC from Sphingomonas koreensis

44% id,
97% cov

DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC from Corynebacterium glutamicum
P08499: homoserine dehydrogenase (EC from Corynebacterium glutamicum

41% id,
96% cov


PS417_21655: aspartate kinase
is similar to:

Q9WZ17: homoserine dehydrogenase (EC; aspartate kinase (EC from Thermotoga maritima

45% id,
54% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC; EC from Bacteroides thetaiotaomicron

29% id,
48% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC; EC from Pedobacter sp.

31% id,
45% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory