Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.376' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_22005: epimerase
is similar to:
PaperBLAST

ARADH_HALVD / D4GP33: L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii
xacB / D4GP33: L-arabinose 1-dehydrogenase (NADP+) monomer (EC 1.1.1.376) from Haloferax volcanii
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii

35% id,
99% cov

PS417_17360: NAD-dependent dehydratase
is similar to:
PaperBLAST

ARADH_HALVD / D4GP33: L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii
xacB / D4GP33: L-arabinose 1-dehydrogenase (NADP+) monomer (EC 1.1.1.376) from Haloferax volcanii
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii

30% id,
97% cov

PS417_15165: 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

25% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory