Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 33 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_16525: isocitrate dehydrogenase
is similar to:
PaperBLAST

Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans

59% id,
98% cov

Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus

48% id,
99% cov

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

32% id,
87% cov

More...

PS417_16530: isocitrate dehydrogenase
is similar to:
PaperBLAST

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

50% id,
100% cov

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

50% id,
100% cov

PS417_18585: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans

34% id,
93% cov

IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

33% id,
90% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

32% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory