Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 59 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_18585: 3-isopropylmalate dehydrogenase
is similar to:

P96197: 3-isopropylmalate dehydrogenase (EC from Azotobacter vinelandii

75% id,
100% cov

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC from Acidithiobacillus ferrooxidans

62% id,
99% cov

Q00412: 3-isopropylmalate dehydrogenase (EC from Arthrospira platensis

60% id,
98% cov


PS417_16525: isocitrate dehydrogenase
is similar to:

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC; EC 1.1.1.n5; EC from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC from Methanocaldococcus jannaschii

34% id,
98% cov

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC; EC; EC from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC; EC; EC from Escherichia coli

29% id,
89% cov

Q72IW9: isocitrate-homoisocitrate dehydrogenase (EC; 3-isopropylmalate dehydrogenase (EC from Thermus thermophilus

34% id,
71% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory