Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_23660: catechol 1,2-dioxygenase
is similar to:
PaperBLAST

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

100% id,
100% cov

AO353_23525: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens

80% id,
100% cov

PfGW456L13_3822: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens

80% id,
100% cov

More...

PS417_06715: protocatechuate 3,4-dioxygenase
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

28% id,
72% cov

salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

30% id,
55% cov

catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii

35% id,
45% cov

More...

PS417_06720: protocatechuate 3,4-dioxygenase
is similar to:
PaperBLAST

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

30% id,
56% cov

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

27% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory