Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_05015: homogentisate 1,2-dioxygenase is similar to:	PaperBLAST
AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	91% id, 98% cov
PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	89% id, 98% cov
Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	88% id, 98% cov
HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida	83% id, 98% cov
HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida	82% id, 98% cov
RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis	63% id, 95% cov
HGD_RHIME / Q9X4F5: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Rhizobium meliloti	54% id, 94% cov
Q9ZRA2: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Arabidopsis thaliana	54% id, 94% cov
HGD_EMENI / Q00667: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Emericella nidulans GI\|2832726: homogentisate dioxygenase; EC 1.13.11.5; EC 1.13.11.15 from Emericella nidulans	52% id, 97% cov
HMGA_ASPFU / Q4WHT9: Homogentisate 1,2-dioxygenase hmgA; Homogentisate oxygenase hmgA; Homogentisic acid oxidase hmgA; Homogentisicase hmgA; L-tyrosine degradation gene cluster protein hmgA; Pyomelanin biosynthesis cluster protein hmgA; EC 1.13.11.5 from Aspergillus fumigatus	51% id, 97% cov
HGD_MOUSE / O09173: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Mus musculus	50% id, 98% cov
HGD_HUMAN / Q93099: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Homo sapiens HGD / Q93099: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Homo sapiens	50% id, 98% cov
B8YB76: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Bos taurus	50% id, 98% cov
HGD_CAEEL / Q9Y041: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Caenorhabditis elegans	49% id, 98% cov
Q6JDV6: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Exophiala lecanii-corni	50% id, 91% cov
More...

PS417_19305: acireductone dioxygenase
is similar to:

PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

46% id,
99% cov

PS417_23705: tryptophan 2,3-dioxygenase is similar to:	PaperBLAST
Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris	48% id, 88% cov
P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster	27% id, 58% cov
P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus	38% id, 41% cov
P21643: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Rattus norvegicus	37% id, 41% cov
P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens	41% id, 32% cov
More...

PS417_18180: dioxygenase is similar to:	PaperBLAST
Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.	31% id, 95% cov
NCED4_ORYSJ / Q69NX5: 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; OsNCED4; EC 1.13.11.51 from Oryza sativa	28% id, 81% cov
NCED2_ARATH / O49505: 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic; AtNCED2; EC 1.13.11.51 from Arabidopsis thaliana NCED2 / O49505: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana O49505: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	27% id, 83% cov
A0A075W0Z7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus prunifolia	28% id, 79% cov
A0A1B3B5A6: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	27% id, 82% cov
C4MK80: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus hupehensis	28% id, 79% cov
NCED3_ARATH / Q9LRR7: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic; AtNCED3; Protein SALT TOLERANT 1; EC 1.13.11.51 from Arabidopsis thaliana NCED3 / Q9LRR7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana Q9LRR7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	27% id, 80% cov
A0A220T631: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Citrus reticulata	27% id, 79% cov
A0A1B3B582: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	27% id, 79% cov
A0A0M4UGS6: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Triticum aestivum	27% id, 78% cov
NCED3_ORYSJ / Q5MBR5: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic; OsNCED3; EC 1.13.11.51 from Oryza sativa	27% id, 77% cov
NCED5_ORYSJ / Q5MBR3: 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; OsNCED5; EC 1.13.11.51 from Oryza sativa	27% id, 77% cov
NCED1_PHAVU / Q9M6E8: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; PvNCED1; EC 1.13.11.51 from Phaseolus vulgaris Q9M6E8: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Phaseolus vulgaris	26% id, 77% cov
NCED9_ARATH / Q9M9F5: 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic; AtNCED9; EC 1.13.11.51 from Arabidopsis thaliana NCED9 / Q9M9F5: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana Q9M9F5: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	26% id, 72% cov
Q2PHG1: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	30% id, 57% cov
Q2PHG0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	28% id, 59% cov
NCED5_ARATH / Q9C6Z1: Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic; AtNCED5; EC 1.13.11.51 from Arabidopsis thaliana Q9C6Z1: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	31% id, 52% cov
Q460X8: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Stylosanthes guianensis	31% id, 51% cov
Q70KY0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arachis hypogaea	30% id, 51% cov
Q2PHG2: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	29% id, 53% cov
NCED1_SOLLC / O24023: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; LeNCED1; SlNCED1; Nine-cis-epoxycarotenoid dioxygenase 1; EC 1.13.11.51 from Solanum lycopersicum	30% id, 51% cov
NCED2_SOLLC / K4CJJ1: 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic; LeNCED2; SlNCED2; Nine-cis-epoxycarotenoid dioxygenase 2; EC 1.13.11.51 from Solanum lycopersicum	29% id, 53% cov
NCED_ONCHC / C3VEQ3: 9-cis-epoxycarotenoid dioxygenase, chloroplastic; OgNCED; EC 1.13.11.51 from Oncidium hybrid	30% id, 50% cov
NCED1_MAIZE / O24592: 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; Protein VIVIPAROUS14; VP-14; VP14; EC 1.13.11.51 from Zea mays O24592: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Zea mays	31% id, 50% cov
Q2PHF9: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Lactuca sativa	25% id, 60% cov
NCED1_ORYSJ / Q6YVJ0: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; OsNCED1; EC 1.13.11.51 from Oryza sativa	32% id, 45% cov
NCED6_ARATH / Q9LRM7: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic; AtNCED6; EC 1.13.11.51 from Arabidopsis thaliana NCED6 / Q9LRM7: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arabidopsis thaliana	35% id, 30% cov
A0A075W2E0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Malus prunifolia	34% id, 28% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory