Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 1 curated entries in PaperBLAST's database that match '1.13.12.4' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_15625: lactate dehydrogenase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

34% id,
92% cov

PS417_19130: lactate dehydrogenase
is similar to:
PaperBLAST

LMO_MYCSM / P21795: L-lactate 2-monooxygenase; LMO; Lactate monooxygenase; EC 1.13.12.4 from Mycolicibacterium smegmatis

34% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory