Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 24 curated entries in PaperBLAST's database that match '1.3.8.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_17015: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

100% id,
100% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

97% id,
100% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

97% id,
100% cov

More...

PS417_24590: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AidB / b4187: putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli
AidB / P33224: putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli

48% id,
87% cov

Q75N94: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae

26% id,
68% cov

IVD_ARATH / Q9SWG0: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Arabidopsis thaliana
Q9SWG0: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Arabidopsis thaliana

23% id,
67% cov

More...

PS417_13850: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

41% id,
98% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

41% id,
96% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

40% id,
96% cov

More...

PS417_13840: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

40% id,
99% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

37% id,
96% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

37% id,
95% cov

More...

PS417_04135: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

41% id,
96% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

39% id,
94% cov

IVD_ARATH / Q9SWG0: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Arabidopsis thaliana
Q9SWG0: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Arabidopsis thaliana

40% id,
92% cov

More...

PS417_00580: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

35% id,
99% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

36% id,
96% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

36% id,
97% cov

More...

PS417_20795: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

35% id,
98% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

35% id,
95% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

34% id,
95% cov

More...

PS417_10685: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

35% id,
98% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

34% id,
98% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

34% id,
98% cov

More...

PS417_19585: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

34% id,
99% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

35% id,
95% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

35% id,
94% cov

More...

PS417_16990: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

30% id,
99% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

29% id,
97% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

27% id,
97% cov

More...

PS417_14930: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

32% id,
92% cov

Pf6N2E2_2191: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

29% id,
97% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

29% id,
97% cov

More...

PS417_25960: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

27% id,
98% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

27% id,
96% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

29% id,
90% cov

More...

PS417_25965: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

27% id,
98% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

25% id,
96% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

27% id,
88% cov

More...

PS417_02170: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

27% id,
94% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

26% id,
95% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

27% id,
86% cov

More...

PS417_15190: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

26% id,
94% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

26% id,
94% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

25% id,
96% cov

More...

PS417_25975: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

24% id,
98% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

36% id,
16% cov

PS417_16815: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

24% id,
94% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

24% id,
96% cov

Pf6N2E2_2191: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

24% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory