Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_12515: lactate dehydrogenase
is similar to:

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC from Pseudomonas putida

76% id,
99% cov

PS417_10915: ornithine cyclodeaminase
is similar to:

PY2CR_AZOBR / V5YW53: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; EC from Azospirillum brasilense
V5YW53: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC from Azospirillum brasilense

26% id,
94% cov

Q485R8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC from Colwellia psychrerythraea

27% id,
72% cov

PS417_17585: ornithine cyclodeaminase
is similar to:

CRYM / Q14894: ketimine reductase monomer (EC; EC from Homo sapiens

28% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory