Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 33 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_21075: methylcitrate synthase
is similar to:
PaperBLAST

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

93% id,
100% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

87% id,
100% cov

PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis
SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis

74% id,
100% cov

More...

PS417_08870: type II citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

33% id,
99% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

34% id,
93% cov

PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum
Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum

32% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory