Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 108 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 70 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_23525: glycoside hydrolase
is similar to:

SUS_ACICK / A0A059ZV61: Sucrose synthase; SuSyAc; EC from Acidithiobacillus caldus
AIA55343.1: sucrose synthase (SuSyAc;Acaty_c1477) (EC
A0A059ZV61: sucrose synthase (EC from Acidithiobacillus caldus

27% id,
40% cov

SUS_DENA2 / D4H6M0: Sucrose synthase; SuSyDa; EC from Denitrovibrio acetiphilus
ADD69694.1: sucrose synthase (SuSyDa;Dacet_2944) (EC
D4H6M0: sucrose synthase (EC from Denitrovibrio acetiphilus

24% id,
34% cov

SUS_MELRP / I7A3T6: Sucrose synthase; SuSyMr; EC from Melioribacter roseus
AFN74551.1: sucrose synthase (SuSyMr;MROS_1314) (EC
I7A3T6: sucrose synthase (EC from Melioribacter roseus

37% id,
8% cov

PS417_03130: hypothetical protein
is similar to:

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC

46% id,
5% cov

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC

53% id,
4% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory