Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_25715: anthranilate phosphoribosyltransferase
is similar to:

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC from Xanthomonas campestris

47% id,
97% cov

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC from Thermus thermophilus

42% id,
99% cov

Q9YGB4: anthranilate phosphoribosyltransferase (EC from Thermococcus kodakarensis

38% id,
99% cov


PS417_16455: hypothetical protein
is similar to:

TRPD_SACS2 / P50384: Anthranilate phosphoribosyltransferase; EC from Saccharolobus solfataricus
P50384: anthranilate phosphoribosyltransferase (EC from Saccharolobus solfataricus

26% id,
62% cov

PS417_25720: anthranilate synthase component II
is similar to:

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC; EC from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC; EC from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC from Escherichia coli

41% id,
35% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC; EC from Salmonella typhimurium

41% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory