Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 13 curated entries in PaperBLAST's database that match '2.7.1.178' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_12130: ketodeoxygluconokinase
is similar to:
PaperBLAST

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

53% id,
98% cov

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

53% id,
97% cov

PS417_00155: 2-dehydro-3-deoxygalactonokinase
is similar to:
PaperBLAST

YidV / b3693: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.178; EC 2.7.1.58) from Escherichia coli
dgoK / P31459: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.178) from Escherichia coli

34% id,
100% cov

PS417_12565: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

28% id,
92% cov

KDGK1_HALVD / D4GSE6: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxygluconate/2-keto-3-deoxygalactonate kinase; KDG kinase; KDGK-1; EC 2.7.1.178 from Haloferax volcanii
D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

27% id,
93% cov

PS417_18385: ribokinase
is similar to:
PaperBLAST

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

32% id,
36% cov

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

36% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory