Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 25 curated entries in PaperBLAST's database that match '2.7.1.30'.

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_05575: glycerol kinase
is similar to:
PaperBLAST

PS417_05575: Glycerol kinase (EC 2.7.1.30) from Pseudomonas simiae

100% id,
100% cov

GLPK_ECOLI / P0A6F3: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Escherichia coli
GlpK / b3926: glycerol kinase (EC 2.7.1.30) from Escherichia coli
glpK: glycerol kinase; EC 2.7.1.30 from Escherichia coli
glpK / P0A6F3: glycerol kinase (EC 2.7.1.30) from Escherichia coli

74% id,
100% cov

GLPK_THEAQ / Q9WX53: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Thermus aquaticus

61% id,
98% cov

More...

PS417_17715: actin
is similar to:
PaperBLAST

Q75T26: glycerol kinase (EC 2.7.1.30) from Trypanosoma congolense

27% id,
96% cov

B0I530: glycerol kinase (EC 2.7.1.30) from Trypanosoma vivax

27% id,
94% cov

SM_b21009: Glycerol kinase (EC 2.7.1.30) from Sinorhizobium meliloti

27% id,
96% cov

More...

PS417_12690: xylulose kinase
is similar to:
PaperBLAST

B0M0V1: glycerol kinase (EC 2.7.1.30) from Bombyx mori

23% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory