Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 32 curated entries in PaperBLAST's database that match '2.7.6.1'.

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_03575: ribose-phosphate pyrophosphokinase
is similar to:
PaperBLAST

KPRS_SALTY / P0A1V6: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Salmonella typhimurium

67% id,
100% cov

KPRS_ECOLI / P0A717: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli
DnaR / b1207: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
prs / P0A717: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli
P0A717: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli

67% id,
100% cov

E7EAU9: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Bacillus amyloliquefaciens

51% id,
97% cov

More...

PS417_20790: adenine phosphoribosyltransferase
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

28% id,
56% cov

Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus

31% id,
39% cov

A3MV85: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis

27% id,
44% cov

PS417_18535: amidophosphoribosyltransferase
is similar to:
PaperBLAST

KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis

24% id,
62% cov

KPRS_BACSU / P14193: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis

29% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory