Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_00585: CoA-transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

91% id,
100% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

86% id,
100% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

58% id,
95% cov

More...

PS417_14920: CoA-transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

36% id,
99% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

36% id,
99% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

33% id,
97% cov

More...

PS417_06930: carnitine dehydratase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

35% id,
99% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

34% id,
99% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

35% id,
96% cov

More...

PS417_22865: CoA-transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

35% id,
99% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

34% id,
99% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

34% id,
99% cov

More...

PS417_16430: carnitine dehydratase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

34% id,
100% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

33% id,
100% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

32% id,
96% cov

More...

PS417_22310: CAIB/BAIF family CoA transferase
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

32% id,
51% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

28% id,
57% cov

SUCHY_HUMAN / Q9HAC7: Succinate--hydroxymethylglutarate CoA-transferase; Dermal papilla-derived protein 13; SuccinylCoA:glutarate-CoA transferase; EC 2.8.3.13 from Homo sapiens
SUGCT / Q9HAC7: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens
Q9HAC7: succinate-hydroxymethylglutarate CoA-transferase (EC 2.8.3.13) from Homo sapiens

29% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory