Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 12 curated entries in PaperBLAST's database that match '3.1.1.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_11020: gluconolaconase
is similar to:
PaperBLAST

PS417_11020: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae

100% id,
100% cov

PfGW456L13_2118: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens

77% id,
100% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

77% id,
100% cov

More...

PS417_07255: calcium-binding protein
is similar to:
PaperBLAST

HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae

37% id,
100% cov

Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp.

38% id,
96% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

34% id,
100% cov

More...

PS417_17365: gluconolactonase
is similar to:
PaperBLAST

HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae

34% id,
100% cov

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

35% id,
91% cov

Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp.

33% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory