Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 320 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 251 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_14425: alkylhydroperoxidase
is similar to:

Q8DR24: beta-galactosidase (EC from Streptococcus pneumoniae

46% id,
99% cov

PS417_06840: beta-D-glucoside glucohydrolase
is similar to:

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC|3.2.1.-)

31% id,
79% cov

PS417_06515: beta-agarase
is similar to:

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC

32% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory