Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 230 curated entries in PaperBLAST's database that match '3.2.1.26'.

These curated entries have 188 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_12800: alpha-amylase
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylomicrobium alcaliphilum

27% id,
55% cov

PS417_23045: trehalose-6-phosphate hydrolase
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylomicrobium alcaliphilum

33% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4994492-4996270 (frame -3) on CP007637
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylomicrobium alcaliphilum
Also see hits to annotated proteins above

32% id,
32% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory