Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.93' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_23045: trehalose-6-phosphate hydrolase
is similar to:		 PaperBLAST

PS417_23045: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas simiae

 100% id,
100% cov

AAG31032.1: trehalose-6-phosphate hydrolase (TreA) (EC 3.2.1.93)

 93% id,
100% cov

AO353_15985: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas fluorescens

 87% id,
100% cov

More...

PS417_12800: alpha-amylase
is similar to:		 PaperBLAST

TREC_ECOLI / P28904: Trehalose-6-phosphate hydrolase; Alpha,alpha-phosphotrehalase; EC 3.2.1.93 from Escherichia coli
TreE / b4239: trehalose-6-phosphate hydrolase (EC 3.2.1.93) from Escherichia coli
AAC77196.1: trehalose-6-phosphate hydrolase (TreC) (EC 3.2.1.93)
treC / P28904: trehalose-6-phosphate hydrolase (EC 3.2.1.93) from Escherichia coli

 32% id,
92% cov

BAB38639.1: trehalose 6-P hydrolase (ECs5216) (EC 3.2.1.93)

 31% id,
92% cov

AAU39732.1: trehalose-6-P hydrolase (TreA;BlTreA;BLi00797;BL03069) (EC 3.2.1.93)
Q65MI2: alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Bacillus licheniformis

 37% id,
58% cov

More...

PS417_12795: alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase
is similar to:		 PaperBLAST

ABF38825.1: MGAS10750_Spy1875 (DexS) (EC 3.2.1.93)

 25% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory