Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 12 curated entries in PaperBLAST's database that match '3.5.3.13' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_01705: N-formimino-L-glutamate deiminase
is similar to:
PaperBLAST

PS417_01705: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas simiae

100% id,
100% cov

AO353_12235: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

87% id,
100% cov

Pf1N1B4_1591: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

86% id,
100% cov

More...

PS417_03215: 8-oxoguanine deaminase
is similar to:
PaperBLAST

PfGW456L13_330: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

30% id,
95% cov

AO353_12235: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

30% id,
95% cov

Pf1N1B4_1591: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

30% id,
95% cov

More...

PS417_20900: guanine deaminase
is similar to:
PaperBLAST

Ac3H11_2549: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Acidovorax sp.

26% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory