Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_05020: fumarylacetoacetase
is similar to:

FAAA_CAEEL / Q94272: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC from Caenorhabditis elegans
Q94272: fumarylacetoacetase (EC from Caenorhabditis elegans

49% id,
99% cov

FAAA_HUMAN / P16930: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC from Homo sapiens
FAH / P16930: Fumarylacetoacetase (EC from Homo sapiens

47% id,
97% cov

FAH_ARATH / Q8RW90: Fumarylacetoacetase; Fumarylacetoacetate hydrolase; AtFAH; Protein SHORT-DAY SENSITIVE CELL DEATH 1; EC from Arabidopsis thaliana
Q8RW90: fumarylacetoacetase (EC from Arabidopsis thaliana

46% id,
99% cov


PS417_18185: 5-carboxymethyl-2-hydroxymuconate isomerase
is similar to:

A0A076VF18: fumarylacetoacetase (EC from Rhodotorula diobovata

32% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory