Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_12240: lysine decarboxylase is similar to:	PaperBLAST
A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens	35% id, 95% cov
SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli	35% id, 93% cov
P43099: ornithine decarboxylase (EC 4.1.1.17) from Ligilactobacillus saerimneri	34% id, 92% cov
DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli SpeF / b0693: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli speF / P24169: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli	34% id, 90% cov
H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis	34% id, 91% cov
Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni	35% id, 88% cov
A0A1V3Y1D0: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus gasseri	32% id, 93% cov
Q038E5: ornithine decarboxylase (EC 4.1.1.17) from Lacticaseibacillus casei	31% id, 97% cov
More...

PS417_04005: ornithine decarboxylase is similar to:	PaperBLAST
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans	32% id, 90% cov
Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica	30% id, 89% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	32% id, 80% cov
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca	29% id, 87% cov
ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca	29% id, 86% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	33% id, 75% cov
W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries	32% id, 75% cov
C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata	28% id, 86% cov
DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens	32% id, 75% cov
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum	27% id, 85% cov
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei	34% id, 63% cov
A8J7E8: ornithine decarboxylase (EC 4.1.1.17) from Chlamydomonas reinhardtii	31% id, 67% cov
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa	31% id, 65% cov
ODC1A_TOBAC / A0A1S4AUX8: Ornithine decarboxylase 1A, chloroplastic; EC 4.1.1.17 from Nicotiana tabacum	31% id, 65% cov
ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum	31% id, 65% cov
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum	30% id, 65% cov
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster	31% id, 63% cov
DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae	33% id, 59% cov
ODC / P50134: ornithine decarboxylase (EC 4.1.1.17) from Datura stramonium	30% id, 65% cov
SPE1 / GB\|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans	32% id, 58% cov
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus	35% id, 50% cov
P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus	35% id, 50% cov
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum	29% id, 58% cov
A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis	31% id, 44% cov
DCOR_LEIDO / P27116: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Leishmania donovani P27116: ornithine decarboxylase (EC 4.1.1.17) from Leishmania donovani	30% id, 40% cov
P90517: ornithine decarboxylase (EC 4.1.1.17) from Crithidia fasciculata	29% id, 41% cov
More...

PS417_27580: diaminopimelate decarboxylase is similar to:	PaperBLAST
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster	25% id, 95% cov
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca	27% id, 81% cov
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans	26% id, 82% cov
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis	26% id, 83% cov
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei	32% id, 66% cov
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus	29% id, 56% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory