Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_03005: arginine decarboxylase is similar to:	PaperBLAST
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	98% id, 100% cov
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	87% id, 100% cov
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri	84% id, 100% cov
Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus	47% id, 98% cov
Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis	45% id, 94% cov
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	45% id, 94% cov
A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei	41% id, 100% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	40% id, 94% cov
P72587: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	37% id, 98% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	38% id, 93% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	34% id, 99% cov
Q39827: arginine decarboxylase (EC 4.1.1.19) from Glycine max	37% id, 91% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	37% id, 87% cov
F6KDF0: arginine decarboxylase (EC 4.1.1.19) from Citrus trifoliata	37% id, 85% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	31% id, 99% cov
ADC1B_TOBAC / A0A1S3WYR7: Arginine decarboxylase 1B, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	37% id, 83% cov
ADC1A_TOBAC / A0A1S3YCW2: Arginine decarboxylase 1A, chloroplastic; EC 4.1.1.19 from Nicotiana tabacum	36% id, 83% cov
ADC2_ORYSJ / Q7XRA1: Arginine decarboxylase 2; ARGDC2; OsADC2; EC 4.1.1.19 from Oryza sativa	31% id, 98% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	42% id, 64% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	34% id, 68% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	43% id, 53% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	43% id, 53% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	40% id, 56% cov
SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	41% id, 54% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	39% id, 55% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	41% id, 52% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	40% id, 52% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 50% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 50% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	40% id, 50% cov
SPE1_ORYSJ / Q9SNN0: Arginine decarboxylase 1; ARGDC1; OsADC1; EC 4.1.1.19 from Oryza sativa Q9SNN0: arginine decarboxylase (EC 4.1.1.19) from Oryza sativa	34% id, 33% cov
Q5R1Y5: arginine decarboxylase (EC 4.1.1.19) from Malus domestica	43% id, 24% cov
MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	42% id, 23% cov
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea	43% id, 22% cov
ADC / Q43075: arginine decarboxylase (EC 4.1.1.19) from Pisum sativum	39% id, 24% cov
Q9M7K9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	42% id, 20% cov
Q71S28: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	42% id, 20% cov
Q9LDM9: arginine decarboxylase (EC 4.1.1.19) from Nicotiana tabacum	41% id, 20% cov
SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana	43% id, 19% cov
SPE1 / P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa P22220: arginine decarboxylase (EC 4.1.1.19) from Avena sativa	40% id, 19% cov
More...

PS417_12240: lysine decarboxylase is similar to:	PaperBLAST
ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli adiA / GI\|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli	40% id, 100% cov
E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica	40% id, 100% cov
Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium	27% id, 54% cov
Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium	34% id, 19% cov
More...

PS417_04005: ornithine decarboxylase is similar to:	PaperBLAST
ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens	27% id, 80% cov
Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni	27% id, 28% cov
O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori	25% id, 29% cov

PS417_27580: diaminopimelate decarboxylase is similar to:	PaperBLAST
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa	28% id, 50% cov
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens	27% id, 49% cov
ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum	24% id, 51% cov
P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.	24% id, 47% cov
Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.	23% id, 38% cov
B3Y023: arginine decarboxylase (EC 4.1.1.19) from Prunus persica	24% id, 36% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory