Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_27580: diaminopimelate decarboxylase is similar to:	PaperBLAST
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	65% id, 100% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	48% id, 99% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	42% id, 98% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	42% id, 98% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	41% id, 96% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	40% id, 98% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	38% id, 98% cov
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	35% id, 98% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	36% id, 95% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	35% id, 96% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	34% id, 98% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	33% id, 96% cov
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis	33% id, 96% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	37% id, 83% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	37% id, 82% cov
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	35% id, 45% cov
More...

PS417_04005: ornithine decarboxylase is similar to:	PaperBLAST
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	29% id, 92% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	30% id, 89% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	30% id, 89% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	30% id, 85% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	27% id, 89% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	24% id, 92% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	25% id, 87% cov
More...

PS417_03005: arginine decarboxylase is similar to:	PaperBLAST
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	24% id, 74% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	26% id, 64% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	26% id, 61% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	24% id, 64% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	25% id, 61% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	26% id, 57% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	25% id, 54% cov
More...

PS417_21655: aspartate kinase is similar to:	PaperBLAST
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	26% id, 46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory