Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 89 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_26205: threonine aldolase
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

90% id,
100% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

41% id,
89% cov

O13427: low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans

26% id,
83% cov

PS417_24280: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

74% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

60% id,
94% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

38% id,
94% cov

PS417_26195: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

71% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

61% id,
94% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

35% id,
93% cov

PS417_21665: threonine aldolase
is similar to:
PaperBLAST

LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei
ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei
O07051: L-allo-threonine aldolase (EC 4.1.2.49) from Aeromonas jandaei

59% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

44% id,
97% cov

More...

PS417_26415: fructose-1,6-bisphosphate aldolase
is similar to:
PaperBLAST

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

34% id,
100% cov

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli

34% id,
100% cov

GATY_ECOLX / P0C8J7: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

32% id,
100% cov

More...

PS417_12910: alanine racemase
is similar to:
PaperBLAST

A0A0J9X243: D-threonine aldolase (EC 4.1.2.42) from Achromobacter xylosoxidans

31% id,
93% cov

DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp.
O82872: D-threonine aldolase (EC 4.1.2.42) from Arthrobacter sp.

31% id,
93% cov

A0A1C9ZZ39: D-threonine aldolase (EC 4.1.2.42) from Chlamydomonas reinhardtii

29% id,
86% cov

PS417_06330: S-(hydroxymethyl)glutathione dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

34% id,
83% cov

PS417_07165: dihydrodipicolinate synthase
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

25% id,
93% cov

NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida
Q51947: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

28% id,
77% cov

nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

27% id,
76% cov

PS417_15850: alcohol dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

26% id,
69% cov

PS417_11230: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

23% id,
77% cov

PS417_21315: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

24% id,
54% cov

PS417_22115: transcriptional regulator
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

27% id,
42% cov

PS417_21215: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

27% id,
41% cov

PS417_04370: D-arabinose 5-phosphate isomerase
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

31% id,
30% cov

PS417_00350: methionine ABC transporter substrate-binding protein
is similar to:
PaperBLAST

Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from

29% id,
31% cov

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

27% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2824612-2825802 (frame -1) on CP007637
is similar to:
PaperBLAST

A0A0J9X243: D-threonine aldolase (EC 4.1.2.42) from Achromobacter xylosoxidans
Also see hits to annotated proteins above

31% id,
98% cov

DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp.
O82872: D-threonine aldolase (EC 4.1.2.42) from Arthrobacter sp.
Also see hits to annotated proteins above

31% id,
98% cov

1406012-1407205 (frame +2) on CP007637
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum
Also see hits to annotated proteins above

34% id,
86% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory