Searching in Pseudomonas simiae WCS417 (WCS417)
Found 90 curated entries in PaperBLAST's database that match '4.1.2.4'.
These curated entries have 57 distinct sequences.
Running ublast with E ≤ 0.01
Found 15 relevant proteins in Pseudomonas simiae WCS417, or try another query
| PS417_26205: threonine aldolase is similar to: | PaperBLAST |
O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp. | 90% id, 100% cov |
A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris | 41% id, 89% cov |
O13427: low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans | 26% id, 83% cov |
| PS417_24280: serine hydroxymethyltransferase is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 74% id, 100% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 60% id, 94% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 38% id, 94% cov |
| PS417_26195: serine hydroxymethyltransferase is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 71% id, 100% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 61% id, 94% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 35% id, 93% cov |
| PS417_21665: threonine aldolase is similar to: | PaperBLAST |
LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei | 59% id, 99% cov |
LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli | 58% id, 99% cov |
THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana | 44% id, 97% cov |
| PS417_26415: fructose-1,6-bisphosphate aldolase is similar to: | PaperBLAST |
KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 34% id, 100% cov |
KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 34% id, 100% cov |
gatY / Q65EY6: D-tagatose-bisphosphate aldolase (EC 4.1.2.40) from Bacillus licheniformis | 34% id, 95% cov |
| PS417_12910: alanine racemase is similar to: | PaperBLAST |
A0A0J9X243: D-threonine aldolase (EC 4.1.2.42) from Achromobacter xylosoxidans | 31% id, 93% cov |
DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp. | 31% id, 93% cov |
A0A1C9ZZ39: D-threonine aldolase (EC 4.1.2.42) from Chlamydomonas reinhardtii | 29% id, 86% cov |
| PS417_06330: S-(hydroxymethyl)glutathione dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 34% id, 83% cov |
| PS417_07165: dihydrodipicolinate synthase is similar to: | PaperBLAST |
NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum | 25% id, 93% cov |
NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida | 28% id, 77% cov |
nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida | 27% id, 76% cov |
| PS417_15850: alcohol dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 26% id, 69% cov |
| PS417_11230: hydroxyacid dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 23% id, 77% cov |
| PS417_21315: hydroxyacid dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 24% id, 54% cov |
| PS417_22115: transcriptional regulator is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 27% id, 42% cov |
| PS417_21215: 3-hydroxyacyl-CoA dehydrogenase is similar to: | PaperBLAST |
BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii | 27% id, 41% cov |
| PS417_04370: D-arabinose 5-phosphate isomerase is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 31% id, 30% cov |
| PS417_00350: methionine ABC transporter substrate-binding protein is similar to: | PaperBLAST |
Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from Aminomonas aminovorus | 29% id, 31% cov |
HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens | 27% id, 28% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2824612-2825802 (frame -1) on CP007637 is similar to: | PaperBLAST |
A0A0J9X243: D-threonine aldolase (EC 4.1.2.42) from Achromobacter xylosoxidans | 31% id, 98% cov |
DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp. | 31% id, 98% cov |
| 1406012-1407205 (frame +2) on CP007637 is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 34% id, 86% cov |
Lawrence Berkeley National Laboratory