Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_16570: isocitrate lyase is similar to:	PaperBLAST
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	99% id, 100% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	79% id, 99% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	79% id, 98% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	79% id, 96% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	72% id, 100% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	72% id, 100% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	71% id, 98% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	63% id, 97% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	63% id, 96% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	61% id, 97% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	59% id, 97% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	58% id, 96% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	57% id, 43% cov
ACEA_HYPME / O50078: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum	26% id, 93% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	27% id, 87% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	37% id, 62% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	34% id, 60% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	27% id, 75% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	35% id, 56% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	35% id, 57% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	34% id, 55% cov
Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri	29% id, 64% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	35% id, 50% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	37% id, 46% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	36% id, 47% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	35% id, 48% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	35% id, 48% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	38% id, 44% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	33% id, 51% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	35% id, 47% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	37% id, 45% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	35% id, 46% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	44% id, 32% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	41% id, 33% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	32% id, 42% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	31% id, 42% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	43% id, 30% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	37% id, 35% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	39% id, 32% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	38% id, 32% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	40% id, 31% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	36% id, 34% cov
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	45% id, 25% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	36% id, 32% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	38% id, 23% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	35% id, 19% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	33% id, 19% cov
More...

PS417_21080: 2-methylisocitrate lyase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	34% id, 91% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	36% id, 53% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	35% id, 43% cov

PS417_13705: oxaloacetate decarboxylase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	28% id, 82% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	35% id, 51% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	26% id, 57% cov
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	27% id, 54% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	24% id, 57% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	25% id, 56% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	25% id, 47% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	24% id, 50% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	29% id, 19% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory