Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 62 curated entries in PaperBLAST's database that match '4.2.1.17' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_07575: multifunctional fatty acid oxidation complex subunit alpha
is similar to:
PaperBLAST

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

93% id,
100% cov

fadB / Q88L02: FadB (EC 5.3.3.8; EC 1.1.1.35; EC 5.1.2.3; EC 4.2.1.17; EC 1.1.1.36) from Pseudomonas putida

90% id,
100% cov

HP15_1512: Enoyl-CoA hydratase (EC 4.2.1.17) from Marinobacter adhaerens

70% id,
100% cov

More...

PS417_13845: enoyl-CoA hydratase
is similar to:
PaperBLAST

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

77% id,
100% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

64% id,
100% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

64% id,
100% cov

More...

PS417_10680: enoyl-CoA hydratase
is similar to:
PaperBLAST

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

37% id,
100% cov

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

37% id,
98% cov

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

36% id,
100% cov

More...

PS417_21215: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

FADJ_ECOLI / P77399: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 1.1.1.35 from Escherichia coli
FadJ / b2341: 3-hydroxyacyl-CoA dehydrogenase FadJ (EC 1.1.1.35; EC 1.1.1.211; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli
fadJ / RF|NP_416843: fatty acid oxidation complex subunit alpha; EC 1.1.1.35; EC 4.2.1.17; EC 5.1.2.3 from Escherichia coli
fadJ / P77399: multifunctional 3-hydroxyacyl-CoA dehydrogenase/3-hydroxyacyl-CoA epimerase/enoyl-CoA hydratase FadJ (EC 1.1.1.35; EC 4.2.1.17; EC 4.2.1.74; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli

37% id,
98% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

34% id,
99% cov

fadB / Q88L02: FadB (EC 5.3.3.8; EC 1.1.1.35; EC 5.1.2.3; EC 4.2.1.17; EC 1.1.1.36) from Pseudomonas putida

34% id,
99% cov

More...

PS417_12870: enoyl-CoA hydratase
is similar to:
PaperBLAST

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

34% id,
98% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

32% id,
98% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

31% id,
98% cov

More...

PS417_19590: enoyl-CoA hydratase
is similar to:
PaperBLAST

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

33% id,
98% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

32% id,
98% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

32% id,
99% cov

More...

PS417_08535: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

33% id,
95% cov

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

29% id,
98% cov

Q9I5I4: enoyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas aeruginosa

30% id,
92% cov

More...

PS417_17025: gamma-carboxygeranoyl-CoA hydratase
is similar to:
PaperBLAST

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

33% id,
96% cov

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

29% id,
96% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

27% id,
100% cov

More...

PS417_22625: enoyl-CoA hydratase
is similar to:
PaperBLAST

ECH14_MYCBO / P64019: Probable enoyl-CoA hydratase echA14; EC 4.2.1.17 from Mycobacterium bovis

31% id,
98% cov

Tfu_0067 / Q47TV9: enoyl-CoA hydratase (EC 4.2.1.17) from Thermobifida fusca

32% id,
93% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

33% id,
89% cov

More...

PS417_13835: crotonase
is similar to:
PaperBLAST

Q9SE41: enoyl-CoA hydratase (EC 4.2.1.17) from Avicennia marina

31% id,
92% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

31% id,
87% cov

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

27% id,
97% cov

More...

PS417_11445: enoyl-CoA hydratase
is similar to:
PaperBLAST

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

29% id,
96% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

28% id,
98% cov

Tfu_0067 / Q47TV9: enoyl-CoA hydratase (EC 4.2.1.17) from Thermobifida fusca

27% id,
99% cov

More...

PS417_07030: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q9SE41: enoyl-CoA hydratase (EC 4.2.1.17) from Avicennia marina

29% id,
95% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

28% id,
76% cov

Tfu_0067 / Q47TV9: enoyl-CoA hydratase (EC 4.2.1.17) from Thermobifida fusca

29% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory