Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 9 curated entries in PaperBLAST's database that match '4.2.1.40' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_18895: glucarate dehydratase
is similar to:
PaperBLAST

GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida
gudD / P42206: D-glucarate dehydratase subunit (EC 4.2.1.40) from Pseudomonas putida

80% id,
97% cov

GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
YgcX / b2787: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli
gudD / RF|NP_417267: glucarate dehydratase; EC 4.2.1.40 from Escherichia coli
gudD / P0AES2: D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli

74% id,
99% cov

GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi
gudD / Q6FFQ2: D-glucarate dehydratase subunit (EC 4.2.1.40) from Acinetobacter baylyi
Q6FFQ2: glucarate dehydratase (EC 4.2.1.40) from Acinetobacter baylyi

67% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4091524-4093080 (frame +1) on CP007637
is similar to:
PaperBLAST

GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida
gudD / P42206: D-glucarate dehydratase subunit (EC 4.2.1.40) from Pseudomonas putida
Also see hits to annotated proteins above

79% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory