Searching in Pseudomonas simiae WCS417 (WCS417)
Found 9 curated entries in PaperBLAST's database that match '4.2.1.40' as complete word(s).
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Pseudomonas simiae WCS417, or try another query
PS417_18895: glucarate dehydratase is similar to: | PaperBLAST |
GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida | 80% id, 97% cov |
GUDD_ECOLI / P0AES2: Glucarate dehydratase; GDH; GlucD; D-glucarate dehydratase; EC 4.2.1.40 from Escherichia coli | 74% id, 99% cov |
GUDD_ACIAD / Q6FFQ2: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi | 67% id, 99% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
4091524-4093080 (frame +1) on CP007637 is similar to: | PaperBLAST |
GUDD_PSEPU / P42206: Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida | 79% id, 99% cov |
Lawrence Berkeley National Laboratory