Searching in Pseudomonas simiae WCS417 (WCS417)
Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).
These curated entries have 11 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query
| PS417_11010: FAH family protein is similar to: | PaperBLAST |
Pf1N1B4_4623: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 85% id, 100% cov |
AO356_24595: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 84% id, 100% cov |
Pf6N2E2_611: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 84% id, 100% cov |
| PS417_06885: dihydrodipicolinate synthase is similar to: | PaperBLAST |
Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp. | 32% id, 91% cov |
HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae | 29% id, 95% cov |
KDADA_AZOBR / Q1JUQ0: L-2-keto-3-deoxyarabonate dehydratase; L-KDA dehydratase; 2-dehydro-3-deoxy-L-arabinonate dehydratase; L-2-keto-3-deoxyarabinonate dehydratase; EC 4.2.1.43 from Azospirillum brasilense | 30% id, 90% cov |
| PS417_13310: sugar transporter is similar to: | PaperBLAST |
kdlD / Q9I1Q1: 2-keto-3-deoxy-L-lyxonate dehydratase (EC 4.2.1.43) from Pseudomonas aeruginosa | 31% id, 53% cov |
Pf1N1B4_4623: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 26% id, 56% cov |
AO356_24595: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 26% id, 51% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1582978-1584036 (frame +1) on CP007637 is similar to: | PaperBLAST |
HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae | 25% id, 94% cov |
BPHYT_RS22715: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Burkholderia phytofirmans | 24% id, 93% cov |
Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp. | 22% id, 94% cov |
Lawrence Berkeley National Laboratory