Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_00165: galactonate dehydratase is similar to:	PaperBLAST
MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans	33% id, 100% cov
MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus	33% id, 100% cov
MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides	33% id, 100% cov
MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii	32% id, 100% cov
DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens	32% id, 100% cov
MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum	31% id, 100% cov
MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.	32% id, 100% cov
MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.	30% id, 100% cov
MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum	30% id, 100% cov
MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii	30% id, 100% cov
MAND_ECOMS / D8ADB5: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	30% id, 97% cov
MAND_ECOL6 / Q8FHC7: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	29% id, 97% cov
MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides	28% id, 100% cov
MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.	27% id, 91% cov
MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.	34% id, 51% cov
MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.	34% id, 51% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	37% id, 46% cov
DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata	32% id, 52% cov
MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.	28% id, 58% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	36% id, 42% cov
MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.	39% id, 37% cov
MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.	38% id, 37% cov
MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum	38% id, 37% cov
MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae	29% id, 48% cov
MAND_ECOMS / D8ADB5: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	39% id, 36% cov
MAND_ECOL6 / Q8FHC7: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia coli	39% id, 36% cov
MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum	38% id, 37% cov
MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii	37% id, 37% cov
MAND_XANOB / G7TAD9: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae	43% id, 31% cov
More...

PS417_23670: muconate cycloisomerase is similar to:	PaperBLAST
MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.	22% id, 82% cov
DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca	32% id, 28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory