Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 50 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_22365: serine dehydratase
is similar to:
PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

92% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

68% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

66% id,
100% cov

More...

PS417_05075: serine dehydratase
is similar to:
PaperBLAST

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

92% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

91% id,
100% cov

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

90% id,
100% cov

More...

PS417_26310: serine dehydratase
is similar to:
PaperBLAST

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

77% id,
100% cov

More...

PS417_12925: serine dehydratase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

65% id,
98% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

40% id,
99% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

40% id,
93% cov

More...

PS417_27010: threonine dehydratase
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

42% id,
93% cov

TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum

46% id,
84% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

39% id,
94% cov

More...

PS417_12665: hypothetical protein
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

42% id,
93% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

38% id,
96% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

37% id,
95% cov

More...

PS417_01110: cysteine desulfhydrase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

40% id,
95% cov

PS417_17160: 1-aminocyclopropane-1-carboxylate deaminase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

27% id,
90% cov

PS417_21045: cysteine synthase
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

23% id,
70% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

29% id,
45% cov

PS417_00185: tryptophan synthase subunit beta
is similar to:
PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory