Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_27540: argininosuccinate lyase
is similar to:
PaperBLAST

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

52% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

49% id,
100% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

49% id,
99% cov

More...

PS417_21780: argininosuccinate lyase
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

52% id,
97% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus

41% id,
99% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

40% id,
99% cov

More...

PS417_11635: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

23% id,
94% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

25% id,
82% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

27% id,
64% cov

More...

PS417_06730: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

ARLY_MOUSE / Q91YI0: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Mus musculus

25% id,
86% cov

ARLY_COLLI / Q01592: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin; EC 4.3.2.1 from Columba livia

26% id,
83% cov

ARLY2_ANAPL / P24058: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin II; Delta-2 crystallin; EC 4.3.2.1 from Anas platyrhynchos

25% id,
84% cov

More...

PS417_19200: fumarate hydratase
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

24% id,
79% cov

PS417_28130: aspartate ammonia-lyase
is similar to:
PaperBLAST

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

26% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory