Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_07165: dihydrodipicolinate synthase
is similar to:		 PaperBLAST

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

 82% id,
100% cov

DAPA_ECOLI / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli
DapA / b2478: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
dapA / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli

 56% id,
100% cov

A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae

 53% id,
100% cov

More...

PS417_14310: dihydrodipicolinate synthetase
is similar to:		 PaperBLAST

A9CGZ4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

 74% id,
96% cov

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

 34% id,
72% cov

PS417_24050: dihydrodipicolinate reductase
is similar to:		 PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

 35% id,
96% cov

PS417_06885: dihydrodipicolinate synthase
is similar to:		 PaperBLAST

A9CFV4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

 35% id,
94% cov

dapA / P19808: dihydropicolinate synthase subunit (EC 4.3.3.7) from Corynebacterium glutamicum
P19808: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Corynebacterium glutamicum

 31% id,
92% cov

Q8RBI5: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Caldanaerobacter subterraneus

 29% id,
97% cov

More...

PS417_14640: dihydrodipicolinate synthase
is similar to:		 PaperBLAST

DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii

 33% id,
98% cov

DAPA_THEMA / Q9X1K9: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima

 32% id,
99% cov

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

 32% id,
98% cov

More...

PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase
is similar to:		 PaperBLAST

Q7CU96: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

 29% id,
93% cov

DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis
Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis

 27% id,
99% cov

dapA / P19808: dihydropicolinate synthase subunit (EC 4.3.3.7) from Corynebacterium glutamicum
P19808: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Corynebacterium glutamicum

 27% id,
93% cov

More...

PS417_19170: insecticidal toxin complex protein TcaB1
is similar to:		 PaperBLAST

A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae

 25% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory