Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 23 curated entries in PaperBLAST's database that match '5.3.1.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_10945: xylose isomerase is similar to:	PaperBLAST
PS417_10945: Xylose isomerase (EC 5.3.1.5) from Pseudomonas simiae	100% id, 100% cov
AO356_28500: Xylose isomerase (EC 5.3.1.5) from Pseudomonas fluorescens	91% id, 100% cov
BPHYT_RS32825: Xylose isomerase (EC 5.3.1.5) from Burkholderia phytofirmans	71% id, 99% cov
C7G532: xylose isomerase (EC 5.3.1.5) from Vibrio sp.	70% id, 99% cov
XYLA_ECOLI / P00944: Xylose isomerase; D-xylulose keto-isomerase; EC 5.3.1.5 from Escherichia coli XylA / b3565: xylose isomerase (EC 5.3.1.5) from Escherichia coli xylA / GB\|AAC76589.1: xylose isomerase; EC 5.3.1.5 from Escherichia coli xylA / P00944: xylose isomerase (EC 5.3.1.5) from Escherichia coli	69% id, 99% cov
BWI76_RS27025: Xylose isomerase (EC 5.3.1.5) from Klebsiella michiganensis	68% id, 99% cov
PGA1_c14000: Xylose isomerase (EC 5.3.1.5) from Phaeobacter inhibens	61% id, 99% cov
SMc03163: Xylose isomerase (EC 5.3.1.5) from Sinorhizobium meliloti	61% id, 99% cov
Echvi_1876: Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis	51% id, 99% cov
Q8A9M2: xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron	50% id, 99% cov
D9SR73: xylose isomerase (EC 5.3.1.5) from Clostridium cellulovorans	50% id, 99% cov
B7SLY1: xylose isomerase (EC 5.3.1.5) from Orpinomyces sp.	50% id, 99% cov
D2DK62: xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus	49% id, 100% cov
Q9P8C9: xylose isomerase (EC 5.3.1.5) from Piromyces sp.	49% id, 99% cov
XYLA_THESA / P30435: Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum	48% id, 99% cov
xylA / G2TH70: xylA (EC 5.3.1.5) from Weizmannia coagulans	48% id, 98% cov
XYLA_LEVBR / P29443: Xylose isomerase; EC 5.3.1.5 from Levilactobacillus brevis	43% id, 98% cov
A1A0H0: xylose isomerase (EC 5.3.1.5) from Bifidobacterium adolescentis	43% id, 97% cov
P24300: xylose isomerase (EC 5.3.1.5) from Streptomyces rubiginosus	29% id, 94% cov
P26997: xylose isomerase (EC 5.3.1.5) from Thermus thermophilus	27% id, 96% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory