Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.27' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_00165: galactonate dehydratase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

36% id,
90% cov

PS417_18895: glucarate dehydratase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

25% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory