Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 10 curated entries in PaperBLAST's database that match '6.2.1.16'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_12145: acetoacetyl-CoA synthetase
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

54% id,
99% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

43% id,
97% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

42% id,
97% cov

More...

PS417_17010: AMP-binding protein
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

54% id,
98% cov

PS417_22065: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
90% cov

PS417_23925: acetyl-CoA synthetase
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

27% id,
97% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
94% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

25% id,
90% cov

More...

PS417_13215: Triostin synthetase I
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
93% cov

PS417_04540: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
95% cov

PS417_21750: acetyl-CoA synthetase
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
93% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

24% id,
90% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens
Q86V21: acetoacetate-CoA ligase (EC 6.2.1.16) from Homo sapiens

24% id,
89% cov

More...

PS417_22070: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

37% id,
63% cov

PS417_00605: peptide transporter
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
89% cov

PS417_18255: AMP-binding protein
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

26% id,
85% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
45% cov

PS417_15170: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
65% cov

PS417_13265: peptide synthetase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
73% cov

PS417_10895: AMP-dependent synthetase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
61% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

27% id,
19% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

27% id,
19% cov

More...

PS417_19290: long-chain acyl-CoA synthetase
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
40% cov

PS417_11690: peptide synthase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
36% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
23% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

36% id,
13% cov

PS417_11695: peptide synthase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

22% id,
41% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
19% cov

PS417_19545: peptide synthase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
31% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory