Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 118 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 86 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_01655: glutamine synthetase
is similar to:
PaperBLAST

GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens

93% id,
100% cov

glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli
glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli

69% id,
99% cov

GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica
P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica

68% id,
99% cov

More...

PS417_11785: glutamine synthetase
is similar to:
PaperBLAST

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

32% id,
97% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

30% id,
98% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

32% id,
90% cov

More...

PS417_07365: glutamine synthetase
is similar to:
PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

33% id,
94% cov

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

27% id,
97% cov

Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus

26% id,
97% cov

More...

PS417_27135: glutamine synthetase
is similar to:
PaperBLAST

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

31% id,
97% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
92% cov

Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus

29% id,
98% cov

More...

PS417_27140: gamma-glutamylputrescine synthetase
is similar to:
PaperBLAST

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

30% id,
97% cov

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

31% id,
95% cov

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

31% id,
93% cov

More...

PS417_10580: glutamine synthetase
is similar to:
PaperBLAST

P64246: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

28% id,
98% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

29% id,
93% cov

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

28% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory