Searching in Pseudomonas simiae WCS417 (WCS417)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 15 relevant proteins in Pseudomonas simiae WCS417, or try another query
| PS417_07260: MFS transporter is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 100% id, 100% cov |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 69% id, 95% cov |
| PS417_07265: membrane protein is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 100% id, 100% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 54% id, 96% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 43% id, 95% cov |
| PS417_18890: MFS transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 41% id, 93% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 37% id, 97% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 35% id, 98% cov |
| PS417_11005: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 41% id, 93% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 91% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 38% id, 93% cov |
| PS417_06940: MFS transporter permease is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 39% id, 96% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 38% id, 91% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 36% id, 94% cov |
| PS417_10835: major facilitator transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 37% id, 97% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 37% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 36% id, 94% cov |
| PS417_17855: major facilitator transporter is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 36% id, 98% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 36% id, 92% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 35% id, 91% cov |
| PS417_12995: MFS transporter permease is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 35% id, 96% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 37% id, 92% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 35% id, 92% cov |
| PS417_13980: MFS transporter permease is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 36% id, 94% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 35% id, 96% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 36% id, 91% cov |
| PS417_12560: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 28% id, 95% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 29% id, 89% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 27% id, 95% cov |
| PS417_00170: glucarate transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 27% id, 95% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 25% id, 95% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 24% id, 92% cov |
| PS417_04205: glucarate transporter is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 26% id, 93% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 24% id, 95% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 23% id, 95% cov |
| PS417_24450: membrane protein is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 26% id, 84% cov |
| PS417_06640: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 24% id, 85% cov |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 23% id, 86% cov |
| PS417_12825: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 26% id, 36% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2732662-2733996 (frame -1) on CP007637 is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 28% id, 99% cov |
Lawrence Berkeley National Laboratory