Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas simiae WCS417 (WCS417)

Found 35 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas simiae WCS417, or try another query

PS417_23045: trehalose-6-phosphate hydrolase
is similar to:
PaperBLAST

6lggA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q complexed with sucrose

34% id,
84% cov

6lghA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q covalent intermediate

34% id,
84% cov

6lgbA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase complexed with glucose

34% id,
84% cov

More...

PS417_12800: alpha-amylase
is similar to:
PaperBLAST

AAM42629.1: sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-)

31% id,
51% cov

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

31% id,
50% cov

3czgA / Q6UVM5: Crystal structure analysis of sucrose hydrolase (suh)-glucose complex

30% id,
50% cov

More...

PS417_14485: malto-oligosyltrehalose trehalohydrolase
is similar to:
PaperBLAST

6lggA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q complexed with sucrose

31% id,
19% cov

6lgfA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant d247n complexed with sucrose

31% id,
19% cov

6lghA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase mutant e322q covalent intermediate

31% id,
19% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory